Table 3: SNPs
within the PTPRN2 gene associated with AAO of cancer using PROC PHREG (p < 0.05)
SNP |
Positiona |
Alleleb |
GTc |
HRd |
pe |
AICf |
HRg |
DICh |
rs13239831 |
157124954 |
T |
C-C |
0.66(0.48-0.91) |
1.16E-02 |
7914.6 |
0.68(0.48-0.9) |
7914.5 |
rs7783909 |
157287177 |
A |
A-A |
1.67(1.11-2.5) |
1.36E-02 |
7954.4 |
1.67(1.03-2.36) |
7954.3 |
rs6942917 |
157385952 |
A |
A-G |
1.27(1.07-1.51) |
6.4E-03 |
7952.6 |
1.27(1.06-1.49) |
7952.6 |
rs4716881 |
157509808 |
A |
A-A |
1.32(1.03-1.71) |
3.03E-02 |
7954.0 |
1.33(1.0-1.66) |
7953.9 |
rs4716535 |
157516571 |
T |
C_T |
1.23(1.05-1.44) |
1.08E-02 |
7952.8 |
1.0(0.7-1.3) |
7952.8 |
rs9654713 |
157607912 |
A |
A_G |
1.23(1.06-1.44) |
8.4E-03 |
7953.1 |
1.24(1.06-1.44) |
7953.1 |
rs4909140 |
157721662 |
G |
G_G |
1.38(1.11-1.71) |
3.3E-03 |
7951.4 |
1.39(1.1-1.69) |
7951.4 |
rs7777448 |
157724510 |
A |
A_A |
1.36(1.04-1.63) |
2.35E-02 |
7902.7 |
1.3(1.01-1.6) |
7902.7 |
rs7777968 |
157773101 |
G |
A_G |
1.55(1.08-2.24) |
1.88E-02 |
7953.8 |
1.6(1.04-2.22) |
7953.8 |
rs1670356 |
157953979 |
A |
A‑C |
0.83(0.71-0.97) |
1.75E-02 |
7940.7 |
0.83(0.7-0.96) |
7940.7 |
rs1670340 |
157963783 |
C |
C_C |
1.28(1.04-1.58) |
2.19E-02 |
7954.8 |
1.29(1.03-1.56) |
7954.7 |
a Physical
position(bp); b Minor allele; c
Tested Genotype comparing with the reference;
d Hazards ratio
for the tested genotype based on classic Cox regression analysis using PROC PHREG;
e p-value
for the tested genotype based on classic Cox regression analysis;
f Akaike information criterion (AIC) value based on classic Cox
regression analysis;
g Hazards
ratio for the tested genotype based on Bayesian Cox regression analysis;
h Deviance information criteria (DIC) value based on Bayesian Cox
regression analysis.