Table 3: Subtyping of HTLV-1 LTR region LASP using the HTLV-1 Automated subtyping Tool (Version 1.0).

Name

Length

Report

Assignment

Support

Genome

LTR10_consensus_sequenceNEW

605bp

Report

subtype_a(subgroup_A)(Transcontinental)

100.0

 

LTR12_consensus_sequenceNEW

605bp

Report

subtype_a(subgroup_A)(Transcontinental)

100.0

 

LTR14_consensus_sequenceNEW

607bp

Report

subtype_a(subgroup_A)(Transcontinental)

98.0

 

LTR17_consensus_sequenceNEW

606bp

Report

subtype_a(subgroup_A)(Transcontinental)

96.0

 

LTR20_consensus_sequenceNEW

605bp

Report

subtype_a(subgroup_A)(Transcontinental)

100.0

 

LTR_24_consensus_sequenceNEW

605bp

Report

subtype_a(subgroup_A)(Transcontinental)

94.0

 

* Only bootstrap values above 70% were considered significant and described.