Table 1: SNP coding region, primer sequences and final concentration for PCR amplification (according to Alvarez-Iglesias et al [19]).

Nucleotide Position

Primer Sequences (5’®3’)

Amplicon length (bp)

Final Concentration (µM)

Annealing Temperature (°C)

1119

GCTAAGACCCAAACTGGGATT

GTTCTGGCGAGCAGTTTTGT

84

0.5

56

2092

TGCCCACAGAACCCTCTAAA

TGTCCAAAGAGCTGTTCCTCT

69

0.5

60

4491

ATTAATCCCCTGGCCCAAC

GATGAGTGTGCCTGCAAAGA

56

0.2

57

5417

CCTCAATCACACTACTCCCCATA

GGGGTGGGTTTTGTATGTTC

72

0.5

56

8281-8289del

TAGGGCCCGTATTTACCCTAT

AAGAGGTGTTGGTTCTCTTAATCTTT

109

0.5

55

8414

TACTACCGTATGGCCCACCA

GGGAGGTAGGTGGTAGTTTGTG

96

0.2

57

9824

TTTTGTAGCCACAGGCTTCC

GAGGAAAGTTGAGCCAATAATGA

53

0.4

56

13759

GGAAGCCTATTCGCAGGATT

GTTGTTTGGAAGGGGGATG

64

0.4

57

12705

CCCAAACATTAATCAGTTCTTCAA

TCTCAGCCGATGAACAGTTG

102

0.4

56